Package: velociraptr 1.1.0
velociraptr: Fossil Analysis
Functions for downloading, reshaping, culling, cleaning, and analyzing fossil data from the Paleobiology Database <https://paleobiodb.org>.
Authors:
velociraptr_1.1.0.tar.gz
velociraptr_1.1.0.zip(r-4.5)velociraptr_1.1.0.zip(r-4.4)velociraptr_1.1.0.zip(r-4.3)
velociraptr_1.1.0.tgz(r-4.4-any)velociraptr_1.1.0.tgz(r-4.3-any)
velociraptr_1.1.0.tar.gz(r-4.5-noble)velociraptr_1.1.0.tar.gz(r-4.4-noble)
velociraptr_1.1.0.tgz(r-4.4-emscripten)velociraptr_1.1.0.tgz(r-4.3-emscripten)
velociraptr.pdf |velociraptr.html✨
velociraptr/json (API)
| # Install 'velociraptr' in R: |
| install.packages('velociraptr', repos = c('https://aazaff.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:4551ba9b15. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 14 2024 |
| R-4.5-win | NOTE | Sep 14 2024 |
| R-4.5-linux | NOTE | Sep 14 2024 |
| R-4.4-win | NOTE | Sep 14 2024 |
| R-4.4-mac | NOTE | Sep 14 2024 |
| R-4.3-win | OK | Sep 14 2024 |
| R-4.3-mac | OK | Sep 14 2024 |
Exports:abundanceMatrixageRangescleanTaxonomycompleteTurnoversconstrainAgescullMatrixdownloadPaleogeographydownloadPBDBdownloadPlacesdownloadTimefixedLatitudemeanAlphamultiplicativeBetamultiplyAgesnotEndemicpresenceMatrixsampleBetataxonAlphataxonBetatotalBetatotalGamma
Dependencies:classclassIntDBIe1071KernSmoothmagrittrMASSproxyRcpps2sfunitswk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Create a community matrix of taxon abundances | abundanceMatrix |
| Find the age range for each taxon in a dataframe | ageRanges |
| Clean taxonomic names | cleanTaxonomy |
| Constrain a dataset to only occurrences within a certain age-range | constrainAges constrainAges,multiplyAges multiplyAges |
| Cull rare taxa and depauperate samples | cullMatrix cullMatrix,errorMatrix,culltaxa,cullSamples,occurrencesFlag,diversityFlag,softCull,softTaxa,softSamples |
| Downloads paleogeographic maps | downloadPaleogeography |
| Download Occurrences from the Paleobiology Database | downloadPBDB |
| Download Shapefile of Places | downloadPlaces trueWOF |
| Download geologic timescale | downloadTime |
| Download fixed-latitude equal-area grid | fixedLatitude |
| Multiplicative Diversity Partitioning | completeTurnovers multiplicativeBeta multiplicativeBeta,completeTurnovers,notEndemic notEndemic |
| Create a matrix of presences and absences | presenceMatrix |
| Additive Diversity Partitioning functions | meanAlpha sampleBeta taxonAlpha taxonAlpha,meanAlpha,taxonBeta,sampleBeta,totalGamma taxonBeta totalBeta totalGamma |
